A recent study published in Frontiers in Plant Science by the Research Chair team indicates that the accuracy of genomic prediction models for traits related to growth and wood quality can be increased by considering non-additive genetic effects and large datasets. The implications are important, including to better predict the value of new spruce families without having to phenotype them or wait to do so.
The genomes of new spruce species have just been deciphered. Notwithstanding their size seven times that of the human genome (thus among the largest genomes in the living world), the study confirmed that the largest part of their genomes is made up of repeated and non-coding DNA. As for the genes, most of them were grouped into large families, some of them being in expansion. Also, some genes were found to evolve faster than others at the level of the proteins they encode. They were found to be mainly involved in species differential adaptation to biotic and abiotic stresses, just like for expanding gene families. Therefore, this study sheds light on two important mechanisms of evolution of conifer genomes in response to the multiple environmental stresses that they face since their inception, millions of years ago. Link to the complete publication here.
In the context of climate change, an article has just been published by the researchers of the Chair on the maladaptation of trees in the face of severe climatic stress caused by the growing climate instability. Spring 2021 was exceptionally warm and early under our northern latitudes, leading to an early shoot bud burst up to two weeks earlier than usual. However, at the end of May 2021, the Quebec province was hit by a major cold snap caused by the instability of the polar vortex, which resulted in severe frost damages to the annual growing shoots in young white spruce plantations, and the cancellation of the growth of 2021. The study of young comparative plantations of various seed sources indicated that there was no significant genetic variation in resistance to such severe late frosts. The researchers will follow growth recovery in 2022 to check if significant genetic variation exists and if it is related to previous tree vigor. Link to the complete publication here.
A vast collaborative study has just been published by researchers from the Chair on the distribution of genetic diversity throughout the entire range of this pioneer species, which covers most of the North American continent from Canada to Mexico. The distribution of genomic diversity, estimated using a large number of populations, appeared highly geographically structured. Signatures of genetic adaptation to regional climate were detected, especially for water stress. Other factors were also investigated, such as polyploidy and seed germination, for which significant regional differences were also observed. Link to the complete publication here.
The Chair’s researchers have just published an article on the potential for improving the response to drought in white spruce, thanks to genomic selection. Based on the dendrochronological profiles of trees established on two experimental sites over the past twenty years, they were able to assess the genetic variability in the responses to two distinct droughts suffered by the trees obtained from controlled crosses. In particular, they discovered that the trees that responded best to water stress were those that displayed the best vigor throughout their life. The genomic selection models were as accurate as those developed using conventional approaches, making it possible to accelerate the selection of more resilient trees in the context of climate change, and in particular in relation to the intensification of stress due to droughts. Link to the complete publication here.
In a recent work elected for the cover page of the August 2021 issue of the journal Molecular Ecology, Depardieu et al. combined the results of dendrochronology analyses of mature trees replicated in a common garden, genotype-phenotype associations and genotype-environment associations for thousands of candidate genes, as well as transcriptomics to study the genomic basis of drought resistance in white spruce. In total, they identify 285 genes likely involved in drought resistance including differentially expressed genes in seedlings submitted to water stress. This publication was also the subject of an editorial comment on pages 3893-95 of the same issue. Link to the complete publication.
In a recent publication, Laoué and collaborators combined QTL and transcriptomic approaches to identify a set of genes involved in the synthesis of phenolic defence compounds in white spruce. A major QTL responsible for the constitutive production of neolignane-2 was discovered, as well as 50 genes involved in the phenylpropanoid pathway, which were differentially expressed among trees showing high and low concentrations in flavonoids, stilbenoids and neolignans. This work sheds new light regarding the genes involved in response to biotic and abiotic stress in white spruce. Link to the publication.
An article by Galeano and collaborators based on SNP genotyping showed that on average, 30% of seedlots were contaminated by exogenous pollen in a white spruce open-pollinated seed orchard of Alberta. The source of pollen contamination was located one kilometer away from the seed orchard upstream of dominant winds. In addition, this study showed that the achievement of 5% genetic gain in height through eliminating two-thirds of the orchard generated an eight-fold loss in effective population size, while observed heterozygosity and inbreeding remained largely unaffected by tree selection. Link to the publication.
On December 3, at a ceremony held in Ottawa, the team of the FastTRAC spruce genomics technology transfer project was rewarded with the Impact Prize for excellence in science from Natural Resources Canada.